Breakfast Egg Muffins with Bacon

Featured in: Home Kitchen Cooking

These handheld breakfast muffins combine fluffy eggs with savory bacon, sharp cheddar, and crisp bell peppers for a protein-rich morning meal. Ready in just 35 minutes, they bake up golden and set in a standard muffin tin, making them ideal for meal prep or busy weekdays.

The simple whisk-and-pour method means minimal prep work—just mix eggs with milk, cheese, vegetables, and seasonings, then bake until set. Each muffin delivers 11 grams of protein while staying gluten-free.

Store cooled muffins in the refrigerator for up to 5 days or freeze for longer keeping. Reheat quickly in the microwave for a warm breakfast on the go, or serve with salsa and hot sauce for extra kick.

Updated on Mon, 02 Feb 2026 15:46:00 GMT
Golden-baked Breakfast Egg Muffins with melted cheddar, crumbled bacon, and vibrant diced bell peppers, served warm. Save
Golden-baked Breakfast Egg Muffins with melted cheddar, crumbled bacon, and vibrant diced bell peppers, served warm. | saborakal.com

Sunday mornings used to mean scrambling eggs at the stove while everyone waited impatiently at the table. Then I tried baking a dozen of these little golden cups all at once, and suddenly I had time to sit down with my coffee while they finished in the oven. The smell of melted cheddar and crispy bacon drifting through the kitchen became the new weekend ritual. Now I make a double batch every week, and my mornings start with grabbing one from the fridge instead of standing over a pan half-awake.

I started bringing these to early morning meetings, and they disappeared faster than the donuts. Someone asked if I catered on the side. I laughed and said it was just eggs and a muffin tin, but the truth is they look impressive without any fuss. Theyre warm, filling, and no one has to eat sad cereal at their desk.

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Ingredients

  • 6 large eggs: The foundation of every muffin, whisked until frothy so they bake up light and fluffy instead of dense.
  • 1/2 cup milk: This keeps the eggs tender and prevents them from turning rubbery in the oven.
  • 1/2 cup shredded cheddar cheese: It melts into every bite and creates those golden edges everyone fights over.
  • 1/2 cup diced bell peppers: I use a mix of red and yellow for color, and they add a subtle sweetness that balances the bacon.
  • 1/2 cup diced onions: A little sharpness that mellows as it bakes, adding depth without overpowering.
  • 1/2 cup cooked and crumbled bacon: Crispy, salty, essential, though Ive swapped in sausage or left it out entirely when cooking for vegetarians.
  • 1/2 teaspoon salt, 1/4 teaspoon black pepper, 1/4 teaspoon garlic powder, 1/4 teaspoon paprika: Just enough seasoning to make each muffin taste like it has a secret, not like it came from a carton.
  • Cooking spray or olive oil: A light coat in each cup prevents sticking and makes cleanup almost too easy.

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Instructions

Preheat and Prep Your Tin:
Set your oven to 350 degrees and give your muffin tin a good spray or brush with olive oil. Dont skip this or youll be prying them out later with a spoon.
Whisk the Base:
Crack your eggs into a large bowl, pour in the milk, and whisk hard until the mixture is frothy and pale yellow. This step makes all the difference in texture.
Fold in the Fillings:
Stir in the cheddar, bell peppers, onions, bacon, and all your seasonings until everything is evenly distributed. The batter should look colorful and chunky.
Fill the Cups:
Pour the mixture into each muffin cup, filling them about two thirds full so they have room to puff up without overflowing. I use a ladle for this and it takes thirty seconds.
Bake Until Golden:
Slide the tin into the oven and bake for eighteen to twenty minutes, until the tops are set and just starting to turn golden at the edges. A toothpick poked in the center should come out clean.
Cool and Release:
Let them sit in the tin for five minutes to firm up, then run a knife around the edges if needed and pop them out. Theyll release easily if you greased well.
Freshly baked Breakfast Egg Muffins filled with fluffy eggs, crispy bacon, onions, and bell peppers, perfect for breakfast. Save
Freshly baked Breakfast Egg Muffins filled with fluffy eggs, crispy bacon, onions, and bell peppers, perfect for breakfast. | saborakal.com

The first time I packed these for a road trip, I realized they were better than any drive through breakfast. We ate them cold at a rest stop, and they still tasted like home. Now theyre my go to whenever we leave early, and my kids ask for them the night before.

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Making Them Your Own

Ive made these with crumbled sausage instead of bacon, and once with diced ham when that was all I had left. My sister leaves out the meat entirely and loads hers with spinach and mushrooms, and they turn out just as satisfying. You can swap cheddar for feta or mozzarella depending on your mood, and each version feels like a completely different breakfast.

Storage and Reheating

I keep mine in a glass container in the fridge, and they stay fresh for up to five days. In the morning I microwave one for about thirty seconds, and it comes out hot and fluffy like it just left the oven. Ive also frozen a batch, and after thawing them overnight in the fridge, they reheat perfectly without getting watery.

Serving Suggestions

These muffins are sturdy enough to eat with your hands, but I like setting out a little bowl of salsa or hot sauce for anyone who wants extra kick. Sometimes I serve them on a plate with sliced avocado and cherry tomatoes for a more composed breakfast. Theyre versatile enough to work as a snack, a side, or the main event.

  • Try them with a drizzle of sriracha mayo for a creamy spicy contrast.
  • Pair with fresh fruit or a handful of greens to round out the plate.
  • Wrap one in a tortilla with extra cheese for an on the go breakfast burrito.
Close-up of savory Breakfast Egg Muffins studded with cheddar cheese, bacon bits, and colorful peppers, ready to eat. Save
Close-up of savory Breakfast Egg Muffins studded with cheddar cheese, bacon bits, and colorful peppers, ready to eat. | saborakal.com

These little muffins have saved more mornings than I can count, and theyve turned me into someone who actually looks forward to early starts. Make a batch tonight, and tomorrow youll thank yourself when breakfast is already waiting.

Recipe FAQs

Can I make these egg muffins ahead of time?

Yes, these muffins are perfect for meal prep. Cool completely and store in an airtight container in the refrigerator for up to 5 days. Reheat individual portions in the microwave for 30-60 seconds until warmed through.

What vegetables work best in these muffins?

Bell peppers, onions, spinach, mushrooms, and diced tomatoes all work wonderfully. Sauté vegetables briefly before adding to prevent excess moisture. Stick to about 1 cup total vegetables to maintain the proper texture.

How do I know when the muffins are done baking?

The muffins are ready when they're set and lightly golden on top, typically 18-20 minutes at 350°F. A toothpick inserted in the center should come out clean. They'll puff up during baking and settle slightly as they cool.

Can I freeze these breakfast muffins?

Absolutely. Cool completely, then freeze in a single layer before transferring to a freezer bag. They'll keep for 2-3 months. Thaw overnight in the refrigerator and reheat in the microwave or at 350°F for about 10 minutes.

What cheese substitutions can I use?

Shredded mozzarella, Swiss, pepper jack, or crumbled feta all work well. Use about 1/2 cup total cheese. Stronger cheeses like feta or aged cheddar can be used in smaller quantities for the same flavor impact.

How can I make these vegetarian?

Simply omit the bacon or replace it with vegetarian sausage crumbles, diced mushrooms, spinach, or additional vegetables. You can also add plant-based cheese alternatives to keep them dairy-free.

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Breakfast Egg Muffins with Bacon

Protein-packed muffins with eggs, cheddar, bacon, and vegetables. Ready in 35 minutes, makes 12 servings.

Prep Time
10 minutes
Time to Cook
20 minutes
Overall Duration
30 minutes
Created by Shannon Mead


Skill Level Easy

Cuisine American

Makes 5 Portions

Nutrition Details No Gluten, Lower-Carb

What You Need

Eggs & Dairy

01 6 large eggs
02 1/2 cup whole milk
03 1/2 cup shredded cheddar cheese

Vegetables

01 1/2 cup diced bell peppers (red, green, or yellow)
02 1/2 cup diced onions

Proteins

01 1/2 cup cooked and crumbled bacon

Seasonings

01 1/2 teaspoon salt
02 1/4 teaspoon black pepper
03 1/4 teaspoon garlic powder
04 1/4 teaspoon paprika

For Greasing

01 Cooking spray or olive oil for muffin tin

How To Make It

Step 01

Preheat oven: Preheat oven to 350°F (175°C).

Step 02

Prepare muffin tin: Grease a standard 12-cup muffin tin with cooking spray or olive oil.

Step 03

Combine eggs and milk: In a large bowl, whisk together eggs and milk until well combined and slightly frothy.

Step 04

Mix filling ingredients: Stir in cheddar cheese, bell peppers, onions, bacon, salt, black pepper, garlic powder, and paprika until evenly mixed.

Step 05

Fill muffin cups: Pour the mixture into the prepared muffin tin, filling each cup approximately two-thirds full.

Step 06

Bake muffins: Bake for 18 to 20 minutes, or until muffins are set and lightly golden. A toothpick inserted in the center should come out clean.

Step 07

Cool and remove: Remove from oven and let cool for 5 minutes. Carefully loosen muffins with a knife if needed and remove from tin.

Step 08

Serve or store: Serve warm, or cool completely and store in an airtight container in the refrigerator for up to 5 days. Reheat in the microwave before serving.

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Tools You'll Need

  • 12-cup muffin tin
  • Large mixing bowl
  • Whisk
  • Measuring cups and spoons
  • Knife and cutting board

Allergy Notice

Review the ingredient list for allergen risks and talk to a nutrition expert if you're unsure.
  • Contains eggs and milk/dairy products
  • May contain pork depending on protein selection
  • Verify ingredient labels on sausage and add-ins for gluten contamination

Nutritional info (per portion)

These values are for your reference—they're not a replacement for personalized medical advice.
  • Caloric value: 150
  • Fats: 10 g
  • Carbohydrates: 2 g
  • Proteins: 11 g

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